Function reference • ospsuite.parameteridentification

Parameter identification workflow

ParameterIdentification: ParameterIdentification

PIConfiguration: PIConfiguration

PIOutputMapping: PIOutputMapping

PIParameters: PIParameters

Supported options

Algorithms: Optimization Algorithms

AlgorithmOptions_HJKB AlgorithmOptions_BOBYQA AlgorithmOptions_DEoptim: Algorithm Options for Optimization Algorithms

ObjectiveFunctionOptions: Objective Function Options for Model Fit Assessment

ObjectiveFunctionSpecs: Objective Function Specifications

residualWeightingOptions: Residual Weighting Methods for Cost Function

robustMethodOptions: Robust Weighting Methods for Cost Function

ScalingOptions: Scaling Options for Output Mapping

Internal functions

calculateCostMetrics(): Calculate Cost Metrics for Model Evaluation

plot(<modelCost>): Plot Model Cost Residuals

Miscelaneous

getOSPSuitePISetting(): Get the value of a global ospsuite.parameteridentification setting.

ospsuitePIRSettingNames: Names of the settings stored in piEnv Can be used with getOSPSuitePISetting()

validateIsOption(): Validate Input Options Against Valid Options

getSteadyState(): Get the steady-state values of species and state variable parameters.