Converts a SimulationResults objects to a data.frame
Source: R/utilities-simulation-results.R
simulationResultsToDataFrame.RdConverts a SimulationResults objects to a data.frame
Usage
simulationResultsToDataFrame(
simulationResults,
quantitiesOrPaths = NULL,
population = NULL,
individualIds = NULL
)
simulationResultsToTibble(
simulationResults,
quantitiesOrPaths = NULL,
population = NULL,
individualIds = NULL
)Arguments
- simulationResults
Object of type
SimulationResultsproduced by callingrunSimulationson aSimulationobject.- quantitiesOrPaths
Quantity instances (element or vector) typically retrieved using
getAllQuantitiesMatchingor quantity path (element or vector of strings) for which the results are to be returned. (optional) When providing the paths, only absolute full paths are supported (i.e., no matching with '*' possible). If quantitiesOrPaths isNULL(default value), returns the results for all output defined in the results.- population
population used to calculate the
simulationResults(optional). This is used only to add the population covariates to the resulting data table.- individualIds
numericIDs of individuals for which the results should be extracted. By default, all individuals from the results are considered. If the individual with the provided ID is not found, the ID is ignored.
Value
SimulationResults object as data.frame with columns IndividualId, Time, paths, simulationValues, unit, dimension, TimeUnit.
Examples
library(ospsuite)
simPath <- system.file("extdata", "simple.pkml", package = "ospsuite")
sim <- loadSimulation(simPath)
# Running an individual simulation
# results is an instance of `SimulationResults`
results <- runSimulations(sim)[[1]]
# convert to a dataframe
simulationResultsToDataFrame(results)
#> IndividualId Time paths simulationValues TimeDimension TimeUnit
#> 1 0 0 Organism|Liver|A 30.000000 Time min
#> 2 0 0 Organism|Liver|B 5.000000 Time min
#> 3 0 0 Organism|A 40.000000 Time min
#> 4 0 0 Organism|B 10.000000 Time min
#> 5 0 15 Organism|Liver|A 25.820301 Time min
#> 6 0 15 Organism|Liver|B 9.179699 Time min
#> 7 0 15 Organism|A 34.427067 Time min
#> 8 0 15 Organism|B 15.572932 Time min
#> 9 0 30 Organism|Liver|A 22.223164 Time min
#> 10 0 30 Organism|Liver|B 12.776835 Time min
#> 11 0 30 Organism|A 29.630886 Time min
#> 12 0 30 Organism|B 20.369114 Time min
#> 13 0 45 Organism|Liver|A 19.129129 Time min
#> 14 0 45 Organism|Liver|B 15.870872 Time min
#> 15 0 45 Organism|A 25.505505 Time min
#> 16 0 45 Organism|B 24.494495 Time min
#> 17 0 60 Organism|Liver|A 16.467295 Time min
#> 18 0 60 Organism|Liver|B 18.532705 Time min
#> 19 0 60 Organism|A 21.956394 Time min
#> 20 0 60 Organism|B 28.043606 Time min
#> 21 0 75 Organism|Liver|A 14.176212 Time min
#> 22 0 75 Organism|Liver|B 20.823788 Time min
#> 23 0 75 Organism|A 18.901617 Time min
#> 24 0 75 Organism|B 31.098383 Time min
#> 25 0 90 Organism|Liver|A 12.203826 Time min
#> 26 0 90 Organism|Liver|B 22.796175 Time min
#> 27 0 90 Organism|A 16.271769 Time min
#> 28 0 90 Organism|B 33.728233 Time min
#> 29 0 105 Organism|Liver|A 10.505752 Time min
#> 30 0 105 Organism|Liver|B 24.494247 Time min
#> 31 0 105 Organism|A 14.007668 Time min
#> 32 0 105 Organism|B 35.992332 Time min
#> 33 0 120 Organism|Liver|A 9.043887 Time min
#> 34 0 120 Organism|Liver|B 25.956112 Time min
#> 35 0 120 Organism|A 12.058517 Time min
#> 36 0 120 Organism|B 37.941483 Time min
#> 37 0 135 Organism|Liver|A 7.785418 Time min
#> 38 0 135 Organism|Liver|B 27.214582 Time min
#> 39 0 135 Organism|A 10.380558 Time min
#> 40 0 135 Organism|B 39.619442 Time min
#> 41 0 150 Organism|Liver|A 6.702065 Time min
#> 42 0 150 Organism|Liver|B 28.297935 Time min
#> 43 0 150 Organism|A 8.936086 Time min
#> 44 0 150 Organism|B 41.063915 Time min
#> 45 0 165 Organism|Liver|A 5.769464 Time min
#> 46 0 165 Organism|Liver|B 29.230536 Time min
#> 47 0 165 Organism|A 7.692618 Time min
#> 48 0 165 Organism|B 42.307381 Time min
#> 49 0 180 Organism|Liver|A 4.966637 Time min
#> 50 0 180 Organism|Liver|B 30.033363 Time min
#> 51 0 180 Organism|A 6.622183 Time min
#> 52 0 180 Organism|B 43.377815 Time min
#> 53 0 195 Organism|Liver|A 4.275526 Time min
#> 54 0 195 Organism|Liver|B 30.724474 Time min
#> 55 0 195 Organism|A 5.700700 Time min
#> 56 0 195 Organism|B 44.299301 Time min
#> 57 0 210 Organism|Liver|A 3.680582 Time min
#> 58 0 210 Organism|Liver|B 31.319418 Time min
#> 59 0 210 Organism|A 4.907443 Time min
#> 60 0 210 Organism|B 45.092556 Time min
#> 61 0 225 Organism|Liver|A 3.168425 Time min
#> 62 0 225 Organism|Liver|B 31.831575 Time min
#> 63 0 225 Organism|A 4.224566 Time min
#> 64 0 225 Organism|B 45.775433 Time min
#> 65 0 240 Organism|Liver|A 2.727535 Time min
#> 66 0 240 Organism|Liver|B 32.272465 Time min
#> 67 0 240 Organism|A 3.636713 Time min
#> 68 0 240 Organism|B 46.363285 Time min
#> 69 0 255 Organism|Liver|A 2.347995 Time min
#> 70 0 255 Organism|Liver|B 32.652004 Time min
#> 71 0 255 Organism|A 3.130660 Time min
#> 72 0 255 Organism|B 46.869339 Time min
#> 73 0 270 Organism|Liver|A 2.021268 Time min
#> 74 0 270 Organism|Liver|B 32.978733 Time min
#> 75 0 270 Organism|A 2.695024 Time min
#> 76 0 270 Organism|B 47.304977 Time min
#> 77 0 285 Organism|Liver|A 1.740006 Time min
#> 78 0 285 Organism|Liver|B 33.259995 Time min
#> 79 0 285 Organism|A 2.320008 Time min
#> 80 0 285 Organism|B 47.679993 Time min
#> 81 0 300 Organism|Liver|A 1.497881 Time min
#> 82 0 300 Organism|Liver|B 33.502117 Time min
#> 83 0 300 Organism|A 1.997175 Time min
#> 84 0 300 Organism|B 48.002823 Time min
#> dimension unit molWeight
#> 1 Amount µmol NA
#> 2 Amount µmol NA
#> 3 Amount µmol NA
#> 4 Amount µmol NA
#> 5 Amount µmol NA
#> 6 Amount µmol NA
#> 7 Amount µmol NA
#> 8 Amount µmol NA
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#> 15 Amount µmol NA
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#> 23 Amount µmol NA
#> 24 Amount µmol NA
#> 25 Amount µmol NA
#> 26 Amount µmol NA
#> 27 Amount µmol NA
#> 28 Amount µmol NA
#> 29 Amount µmol NA
#> 30 Amount µmol NA
#> 31 Amount µmol NA
#> 32 Amount µmol NA
#> 33 Amount µmol NA
#> 34 Amount µmol NA
#> 35 Amount µmol NA
#> 36 Amount µmol NA
#> 37 Amount µmol NA
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#> 39 Amount µmol NA
#> 40 Amount µmol NA
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#> 44 Amount µmol NA
#> 45 Amount µmol NA
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#> 48 Amount µmol NA
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#> 50 Amount µmol NA
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#> 55 Amount µmol NA
#> 56 Amount µmol NA
#> 57 Amount µmol NA
#> 58 Amount µmol NA
#> 59 Amount µmol NA
#> 60 Amount µmol NA
#> 61 Amount µmol NA
#> 62 Amount µmol NA
#> 63 Amount µmol NA
#> 64 Amount µmol NA
#> 65 Amount µmol NA
#> 66 Amount µmol NA
#> 67 Amount µmol NA
#> 68 Amount µmol NA
#> 69 Amount µmol NA
#> 70 Amount µmol NA
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#> 84 Amount µmol NA