Export steady-state to Excel in the format that can be imported in MoBi.

Usage

exportSteadyStateToXLS(
  simulation,
  quantitiesPaths = NULL,
  resultsXLSPath = "",
  steadyStateTime = NULL,
  ignoreIfFormula = TRUE,
  lowerThreshold = 1e-15,
  simulationRunOptions = NULL
)

Arguments

simulation: A Simulation object for which the steady-state will be simulated. In contrast to getSteadyState(), only one simulation is supported.
quantitiesPaths: List of quantity paths (molecules and/or parameters) for which the steady-state will be simulated. If NULL (default), all molecules and state variable parameters are considered. The same list is applied for all simulations.
resultsXLSPath: Path to the xls-file where the results will be written to. If the file does not exist, a new file is created. If no path is provided, the file will be created in the same directory where the model file is located. The name of the file will be <SimulationFileName>_SS.xlsx.
steadyStateTime: Simulation time (minutes). In NULL (default), the default simulation time is the start time of the last application plus three days. The simulated time must be long enough for the system to reach a steady-state. Either a single value (will be applied for all simulations), or a list of values specific for each simulation. In latter case, must have equal size as simulations. When providing a list, NULL is allowed to calculate the time based on the last application.
ignoreIfFormula: If TRUE (default), species and parameters with initial values defined by a formula are not included.
lowerThreshold: Numerical value (in default unit of the output). Any steady-state values below this value are considered as numerical noise and replaced by 0. If lowerThreshold is NULL, no cut-off is applied. Default value is 1e-15.
simulationRunOptions: Optional instance of a SimulationRunOptions used during the simulation run.

Value

An openxlsx workbook object.

Details

Simulates a given model to its steady-state and creates an Excel-file with the end values of molecules amounts in all containers and parameter values that have a right-hand-side (state variable parameters). The excel file contains two sheets - one for the molecules and one for the parameters.