Set the values of quantities in the simulation by path

Usage

setQuantityValuesByPath(
  quantityPaths,
  values,
  simulation,
  units = NULL,
  stopIfNotFound = TRUE
)

Arguments

quantityPaths: A single or a list of absolute quantity paths
values: A numeric value that should be assigned to the quantities or a vector of numeric values, if the value of more than one quantity should be changed. Must have the same length as 'quantityPaths'.
simulation: Simulation containing the quantities
units: A string or a list of strings defining the units of the values. If NULL (default), values are assumed to be in base units. If not NULL, must have the same length as quantityPaths.
stopIfNotFound: Boolean. If TRUE (default) and no quantity exists for the given path, an error is thrown. If FALSE, a warning is shown to the user.

Examples


simPath <- system.file("extdata", "simple.pkml", package = "ospsuite")
sim <- loadSimulation(simPath)
setQuantityValuesByPath("Organism|Liver|Volume", 1, sim)

setParameterValuesByPath(list("Organism|Liver|Volume", "Organism|Liver|A"), c(2, 3), sim)